STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0641DNA methyltransferase; Similar to GI|2761010 (percent identity: 31 %/query alignment coverage: 100.3 %/subject alignment coverage: 90.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the N(4)/N(6)-methyltransferase family. (380 aa)    
Predicted Functional Partners:
XF_0640
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.796
XF_2313
Site-specific DNA-methyltransferase; Similar to GI|4678636 (percent identity: 41 %/query alignment coverage: 95.9 %/subject alignment coverage: 94.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.761
XF_2297
DNA methylase; Similar to GI|4678636 (percent identity: 40 %/query alignment coverage: 96.2 %/subject alignment coverage: 60.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -57; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.717
XF_1804
Site-specific DNA-methyltransferase; Similar to GI|1773269 (percent identity: 39 %/query alignment coverage: 96.6 %/subject alignment coverage: 89.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.659
XF_0638
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.538
XF_0639
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.538
XF_0536
Transposase OrfB; Similar to GI|6176524 (percent identity: 35 %/query alignment coverage: 84.4 %/subject alignment coverage: 78.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -324.
  
     0.430
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.