STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0649Conserved hypothetical protein; Similar to GI|4981632 (percent identity: 32 %/query alignment coverage: 89.3 %/subject alignment coverage: 90.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (224 aa)    
Predicted Functional Partners:
XF_1054
Conserved hypothetical protein; Similar to GI|4981632 (percent identity: 28 %/query alignment coverage: 97.4 %/subject alignment coverage: 101.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.726
tatA
Conserved hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.571
XF_0650
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.565
XF_0759
N-acetylmuramoyl-L-alanine amidase precursor; Similar to SP|Q46929 (percent identity: 45 %/query alignment coverage: 41.7 %/subject alignment coverage: 54.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   0.546
XF_2673
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.499
XF_2013
Conserved hypothetical protein; Similar to SP|P44905 (percent identity: 35 %/query alignment coverage: 88.2 %/subject alignment coverage: 95.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.407
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.