STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0652Peptidyl-prolyl cis-trans isomerase; Similar to SP|P30856 (percent identity: 43 %/query alignment coverage: 100.6 %/subject alignment coverage: 81.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (159 aa)    
Predicted Functional Partners:
XF_0651
Transport protein; Similar to SP|P42107 (percent identity: 33 %/query alignment coverage: 97.2 %/subject alignment coverage: 104.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.728
XF_0653
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.566
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
    0.546
XF_0654
Conserved hypothetical protein; Similar to GI|1742728 (percent identity: 31 %/query alignment coverage: 81.2 %/subject alignment coverage: 94.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.466
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.