STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0679Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (78 aa)    
Predicted Functional Partners:
XF_0680
Phage-related protein; Similar to GI|6118036 (percent identity: 56 %/query alignment coverage: 96.6 %/subject alignment coverage: 99.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0681
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0682
Phage-related protein; Similar to GI|6118039 (percent identity: 50 %/query alignment coverage: 89.1 %/subject alignment coverage: 88.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0683
Phage-related DNA polymerase; Similar to GI|6118040 (percent identity: 50 %/query alignment coverage: 88.3 %/subject alignment coverage: 64.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0684
Phage-related protein; Similar to GI|928839 (percent identity: 49 %/query alignment coverage: 21.1 %/subject alignment coverage: 39.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0685
Phage-related protein; Similar to GI|6118045 (percent identity: 53 %/query alignment coverage: 95.7 %/subject alignment coverage: 97.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.570
XF_0686
Phage-related protein; Similar to GI|6118046 (percent identity: 41 %/query alignment coverage: 100.2 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -120.
       0.570
XF_0687
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.570
XF_0678
Phage-related integrase; Similar to GI|6166382 (percent identity: 27 %/query alignment coverage: 93.5 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -285; Belongs to the 'phage' integrase family.
       0.468
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.