STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0680Phage-related protein; Similar to GI|6118036 (percent identity: 56 %/query alignment coverage: 96.6 %/subject alignment coverage: 99.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (472 aa)    
Predicted Functional Partners:
XF_0683
Phage-related DNA polymerase; Similar to GI|6118040 (percent identity: 50 %/query alignment coverage: 88.3 %/subject alignment coverage: 64.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   0.950
XF_0682
Phage-related protein; Similar to GI|6118039 (percent identity: 50 %/query alignment coverage: 89.1 %/subject alignment coverage: 88.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.946
XF_0685
Phage-related protein; Similar to GI|6118045 (percent identity: 53 %/query alignment coverage: 95.7 %/subject alignment coverage: 97.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.899
XF_0686
Phage-related protein; Similar to GI|6118046 (percent identity: 41 %/query alignment coverage: 100.2 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -120.
 
     0.899
XF_1846
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.892
rpoZ
RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity).
    
 0.820
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.819
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.818
XF_2290
Phage-related protein; Similar to GI|6118040 (percent identity: 57 %/query alignment coverage: 84.3 %/subject alignment coverage: 26.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   0.789
XF_2291
Phage-related protein; Similar to GI|6118040 (percent identity: 47 %/query alignment coverage: 69.0 %/subject alignment coverage: 17.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   0.789
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.