STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0712Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (182 aa)    
Predicted Functional Partners:
XF_0714
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.775
XF_0711
Phage-related terminase large subunit; Similar to SP|P36693 (percent identity: 28 %/query alignment coverage: 95.2 %/subject alignment coverage: 86.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 210.
       0.773
XF_0713
Phage-related portal protein; Similar to SP|P36272 (percent identity: 25 %/query alignment coverage: 96.6 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0717
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.725
XF_0715
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.723
XF_0716
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.723
XF_0718
Conserved hypothetical protein; Similar to GI|5725154 (percent identity: 34 %/query alignment coverage: 95.6 %/subject alignment coverage: 76.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 129.
       0.490
XF_0719
Phage-related baseplate assembly protein; Similar to SP|P31340 (percent identity: 32 %/query alignment coverage: 105.1 %/subject alignment coverage: 97.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.490
XF_0710
Phage-related protein; Similar to SP|P31061 (percent identity: 27 %/query alignment coverage: 86.5 %/subject alignment coverage: 88.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.448
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.