STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0720Proteic killer active protein; Similar to GI|2144254 (percent identity: 33 %/query alignment coverage: 82.4 %/subject alignment coverage: 72.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -9. (91 aa)    
Predicted Functional Partners:
XF_0721
Proteic killer suppression protein; Similar to GI|2144255 (percent identity: 40 %/query alignment coverage: 88.6 %/subject alignment coverage: 101.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -36.
 
 
 
 0.964
XF_1708
Conserved hypothetical protein; Similar to GI|2144254 (percent identity: 34 %/query alignment coverage: 20.2 %/subject alignment coverage: 72.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.664
XF_1709
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.632
XF_0722
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.556
XF_2066
Conserved plasmid protein; Similar to GI|4512441 (percent identity: 35 %/query alignment coverage: 91.2 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.545
XF_0723
Phage-related baseplate assembly protein; Similar to SP|P51768 (percent identity: 40 %/query alignment coverage: 91.2 %/subject alignment coverage: 72.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.422
XF_0724
Phage-related baseplate assembly protein; Similar to SP|P51767 (percent identity: 46 %/query alignment coverage: 101.0 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.422
XF_0725
Phage-related tail protein; Similar to SP|P26701 (percent identity: 35 %/query alignment coverage: 78.4 %/subject alignment coverage: 82.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.422
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.