STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0726Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (382 aa)    
Predicted Functional Partners:
XF_0727
Phage-related contractile tail sheath protein; Similar to GI|2144176 (percent identity: 46 %/query alignment coverage: 98.2 %/subject alignment coverage: 100.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.641
XF_0728
Phage-related contractile tail tube protein; Similar to GI|5725163 (percent identity: 41 %/query alignment coverage: 95.9 %/subject alignment coverage: 96.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.637
XF_0729
Conserved hypothetical protein; Similar to GI|5725164 (percent identity: 32 %/query alignment coverage: 81.1 %/subject alignment coverage: 67.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.636
XF_0731
Phage-related tail protein; Similar to GI|3139113 (percent identity: 40 %/query alignment coverage: 80.0 %/subject alignment coverage: 80.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.460
XF_0733
Phage-related tail protein; Similar to GI|4063801 (percent identity: 32 %/query alignment coverage: 91.7 %/subject alignment coverage: 77.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.460
XF_0732
Phage-related tail protein; Similar to SP|P51772 (percent identity: 41 %/query alignment coverage: 86.1 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.459
XF_0730
Phage-related tail protein; Similar to GI|3139112 (percent identity: 21 %/query alignment coverage: 85.8 %/subject alignment coverage: 77.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 36.
     
 0.408
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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