STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0771ACP; Similar to GI|4886773 (percent identity: 40 %/query alignment coverage: 69.8 %/subject alignment coverage: 73.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (106 aa)    
Predicted Functional Partners:
XF_0670
Malonyl CoA-ACP transacylase; Similar to SP|O85140 (percent identity: 51 %/query alignment coverage: 96.5 %/subject alignment coverage: 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.969
nuoC
NADH-ubiquinone oxidoreductase, NQO5 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
   
 0.958
XF_1639
beta-ketoacyl-[ACP] synthase II; Similar to SP|P39435 (percent identity: 34 %/query alignment coverage: 81.7 %/subject alignment coverage: 78.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.957
nuoB
NADH-ubiquinone oxidoreductase, NQO6 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).
   
 0.941
nuoD
NADH-ubiquinone oxidoreductase, NQO4 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 0.920
XF_0241
Conserved hypothetical protein; Similar to SP|P39315 (percent identity: 56 %/query alignment coverage: 95.2 %/subject alignment coverage: 97.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 0.912
acpP
ACP; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
     
 0.909
XF_0774
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.907
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.904
XF_0309
NADH-ubiquinone oxidoreductase, NQO2 subunit; Similar to SP|Q9ZDH5 (percent identity: 41 %/query alignment coverage: 81.1 %/subject alignment coverage: 80.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
  0.898
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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