STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0774Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (98 aa)    
Predicted Functional Partners:
XF_0775
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.936
XF_0771
ACP; Similar to GI|4886773 (percent identity: 40 %/query alignment coverage: 69.8 %/subject alignment coverage: 73.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.907
XF_1639
beta-ketoacyl-[ACP] synthase II; Similar to SP|P39435 (percent identity: 34 %/query alignment coverage: 81.7 %/subject alignment coverage: 78.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.885
XF_0777
Membrane protein; Similar to SP|Q53902 (percent identity: 22 %/query alignment coverage: 74.1 %/subject alignment coverage: 82.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.786
XF_1038
Peptide synthase; Similar to GI|2808752 (percent identity: 23 %/query alignment coverage: 104.4 %/subject alignment coverage: 98.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.777
XF_0673
3-oxoacyl-[ACP] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 
 0.683
acpP
ACP; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.681
XF_1638
Dolichyl-phosphate mannose synthase related protein; Similar to GI|5457998 (percent identity: 34 %/query alignment coverage: 77.4 %/subject alignment coverage: 100.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.654
XF_0769
Pteridine-dependent deoxygenase; Similar to GI|987108 (percent identity: 34 %/query alignment coverage: 88.2 %/subject alignment coverage: 80.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.652
XF_0670
Malonyl CoA-ACP transacylase; Similar to SP|O85140 (percent identity: 51 %/query alignment coverage: 96.5 %/subject alignment coverage: 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.630
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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