STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0833Transcriptional regulator (LysR family); Similar to SP|P45105 (percent identity: 39 %/query alignment coverage: 86.6 %/subject alignment coverage: 92.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -264; Belongs to the LysR transcriptional regulatory family. (343 aa)    
Predicted Functional Partners:
cysG
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
 
   
 0.680
XF_1730
Transcriptional regulator (LysR family); Similar to SP|P30864 (percent identity: 35 %/query alignment coverage: 96.6 %/subject alignment coverage: 94.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the LysR transcriptional regulatory family.
  
     0.575
XF_0831
Cysteine synthase; Similar to SP|P37887 (percent identity: 51 %/query alignment coverage: 91.0 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the cysteine synthase/cystathionine beta- synthase family.
       0.513
XF_0830
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.494
XF_2710
Glutamate synthase, alpha subunit; Similar to SP|P09831 (percent identity: 53 %/query alignment coverage: 99.7 %/subject alignment coverage: 97.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117.
     
 0.456
XF_1132
Transcriptional regulator (LysR family); Similar to GI|4928923 (percent identity: 33 %/query alignment coverage: 96.7 %/subject alignment coverage: 95.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the LysR transcriptional regulatory family.
  
     0.455
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.