STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0846Beta-mannosidase precursor; Similar to GI|4982197 (percent identity: 35 %/query alignment coverage: 78.0 %/subject alignment coverage: 88.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 117. (891 aa)    
Predicted Functional Partners:
XF_0847
Beta-hexosaminidase precursor; Similar to SP|P49008 (percent identity: 37 %/query alignment coverage: 70.9 %/subject alignment coverage: 76.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 24.
 
 
 0.954
XF_0845
Family 3 glycoside hydrolase; Similar to GI|5690010 (percent identity: 45 %/query alignment coverage: 46.6 %/subject alignment coverage: 59.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.857
XF_2714
alpha-L-fucosidase; Similar to SP|P04066 (percent identity: 36 %/query alignment coverage: 54.4 %/subject alignment coverage: 54.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.851
XF_0848
Conserved hypothetical protein; Similar to SP|P37531 (percent identity: 29 %/query alignment coverage: 70.7 %/subject alignment coverage: 58.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.807
XF_0840
Beta-galactosidase; Similar to SP|P48982 (percent identity: 71 %/query alignment coverage: 93.8 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 
 0.777
XF_0842
Conserved hypothetical protein; Similar to GI|6522844 (percent identity: 32 %/query alignment coverage: 102.2 %/subject alignment coverage: 104.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.772
XF_0106
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.751
XF_0843
Conserved hypothetical protein; Similar to SP|Q10449 (percent identity: 41 %/query alignment coverage: 89.3 %/subject alignment coverage: 90.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.719
XF_0818
Endo-1,4-beta-glucanase; Similar to SP|P19487 (percent identity: 64 %/query alignment coverage: 62.5 %/subject alignment coverage: 75.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.641
XF_1267
1,4-beta-cellobiosidase; Similar to SP|P50401 (percent identity: 46 %/query alignment coverage: 83.9 %/subject alignment coverage: 65.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glycosyl hydrolase family 6.
 
  
 0.574
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.