STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0848Conserved hypothetical protein; Similar to SP|P37531 (percent identity: 29 %/query alignment coverage: 70.7 %/subject alignment coverage: 58.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (351 aa)    
Predicted Functional Partners:
XF_0847
Beta-hexosaminidase precursor; Similar to SP|P49008 (percent identity: 37 %/query alignment coverage: 70.9 %/subject alignment coverage: 76.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 24.
 
   
 0.842
XF_0846
Beta-mannosidase precursor; Similar to GI|4982197 (percent identity: 35 %/query alignment coverage: 78.0 %/subject alignment coverage: 88.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 117.
 
   
 0.807
XF_0845
Family 3 glycoside hydrolase; Similar to GI|5690010 (percent identity: 45 %/query alignment coverage: 46.6 %/subject alignment coverage: 59.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.612
msrB
Conserved hypothetical protein; Similar to SP|P39903 (percent identity: 53 %/query alignment coverage: 76.8 %/subject alignment coverage: 86.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the MsrB Met sulfoxide reductase family.
       0.454
XF_1397
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.452
XF_0840
Beta-galactosidase; Similar to SP|P48982 (percent identity: 71 %/query alignment coverage: 93.8 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.431
XF_2365
GumF protein; Similar to GI|2120728 (percent identity: 44 %/query alignment coverage: 92.0 %/subject alignment coverage: 91.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.401
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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