STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msrBConserved hypothetical protein; Similar to SP|P39903 (percent identity: 53 %/query alignment coverage: 76.8 %/subject alignment coverage: 86.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the MsrB Met sulfoxide reductase family. (155 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity).
 
 0.987
XF_0620
C-type cytochrome biogenesis protein (copper tolerance); Similar to GI|3329039 (percent identity: 32 %/query alignment coverage: 61.2 %/subject alignment coverage: 67.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 
 0.766
XF_0850
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.553
XF_2394
Glutaredoxin-like protein; Similar to GI|3650389 (percent identity: 54 %/query alignment coverage: 26.2 %/subject alignment coverage: 29.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.503
grpE
Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]
   
 
 0.482
XF_0848
Conserved hypothetical protein; Similar to SP|P37531 (percent identity: 29 %/query alignment coverage: 70.7 %/subject alignment coverage: 58.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.454
XF_0847
Beta-hexosaminidase precursor; Similar to SP|P49008 (percent identity: 37 %/query alignment coverage: 70.9 %/subject alignment coverage: 76.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 24.
       0.450
XF_0846
Beta-mannosidase precursor; Similar to GI|4982197 (percent identity: 35 %/query alignment coverage: 78.0 %/subject alignment coverage: 88.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 117.
     
 0.444
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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