STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0855Lipoprotein; Similar to SP|P45682 (percent identity: 39 %/query alignment coverage: 112.8 %/subject alignment coverage: 91.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -144. (242 aa)    
Predicted Functional Partners:
surE
Survival protein; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.
 
  
 0.832
XF_0856
Conserved hypothetical protein; Similar to SP|P36684 (percent identity: 37 %/query alignment coverage: 97.6 %/subject alignment coverage: 104.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.830
pcm
L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
     
 0.816
XF_0167
Conserved hypothetical protein; Similar to GI|3860964 (percent identity: 33 %/query alignment coverage: 90.2 %/subject alignment coverage: 82.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.801
XF_2694
Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.773
XF_0759
N-acetylmuramoyl-L-alanine amidase precursor; Similar to SP|Q46929 (percent identity: 45 %/query alignment coverage: 41.7 %/subject alignment coverage: 54.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.761
XF_0987
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.727
XF_2695
ABC transporter ATP-binding protein; Similar to SP|P10115 (percent identity: 47 %/query alignment coverage: 94.3 %/subject alignment coverage: 96.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 12.
   
 
 0.694
XF_0862
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 45.
 
   
 0.685
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
     
 0.554
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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