Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0865Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (52 aa)    
Predicted Functional Partners:
XF_0863
Homoserine O-acetyltransferase; Similar to GI|6681415 (percent identity: 30 %/query alignment coverage: 99.1 %/subject alignment coverage: 90.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the AB hydrolase superfamily. MetX family.
       0.588
XF_0864
Cystathionine gamma-synthase; Similar to SP|P00935 (percent identity: 57 %/query alignment coverage: 93.1 %/subject alignment coverage: 97.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.588
XF_0866
Cobalt-zinc-cadmium resistance protein; Similar to SP|P13512 (percent identity: 53 %/query alignment coverage: 90.3 %/subject alignment coverage: 91.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.478
XF_0867
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.456
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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