Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0872Outer membrane protein; Similar to SP|P21364 (percent identity: 30 %/query alignment coverage: 87.3 %/subject alignment coverage: 74.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (181 aa)    
Predicted Functional Partners:
XF_0975
Polyphosphate-selective porin O; Similar to SP|P32977 (percent identity: 23 %/query alignment coverage: 97.2 %/subject alignment coverage: 86.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.495
XF_0871
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.492
XF_0343
Outer membrane protein; Similar to GI|4104020 (percent identity: 31 %/query alignment coverage: 98.7 %/subject alignment coverage: 110.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
  
 0.463
XF_0561
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.458
XF_1851
Serine protease; Similar to SP|P09489 (percent identity: 25 %/query alignment coverage: 99.0 %/subject alignment coverage: 94.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.458
lptD
Organic solvent tolerance precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.451
lptE
Hypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
   
 0.451
XF_0418
Toluene tolerance protein; Similar to GI|4336801 (percent identity: 24 %/query alignment coverage: 84.9 %/subject alignment coverage: 86.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.450
XF_1126
Conserved hypothetical protein; Similar to GI|606184 (percent identity: 22 %/query alignment coverage: 40.4 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.435
bamE
Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.414
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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