STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metNABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (334 aa)    
Predicted Functional Partners:
XF_0873
Outer membrane protein; Similar to GI|4156104 (percent identity: 43 %/query alignment coverage: 102.7 %/subject alignment coverage: 98.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.999
XF_0874
ABC transporter permease protein; Similar to GI|6459112 (percent identity: 48 %/query alignment coverage: 91.9 %/subject alignment coverage: 99.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.999
XF_1013
Conserved hypothetical protein; Similar to GI|1787038 (percent identity: 61 %/query alignment coverage: 90.0 %/subject alignment coverage: 92.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 12.
    
   0.672
XF_1121
5,10-methylenetetrahydrofolate reductase; Similar to SP|O67422 (percent identity: 37 %/query alignment coverage: 99.6 %/subject alignment coverage: 92.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the methylenetetrahydrofolate reductase family.
   
  
 0.586
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
  
 0.476
XF_2225
Bifunctional aspartokinase/homoserine dehydrogenase I; Similar to SP|P00561 (percent identity: 40 %/query alignment coverage: 98.4 %/subject alignment coverage: 99.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -126; In the C-terminal section; belongs to the homoserine dehydrogenase family.
   
  
 0.407
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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