Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0879Lipopolysaccharide biosynthesis protein; Similar to GI|3337079 (percent identity: 26 %/query alignment coverage: 94.9 %/subject alignment coverage: 95.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (370 aa)    
Predicted Functional Partners:
XF_0878
Conserved hypothetical protein; Similar to GI|1783247 (percent identity: 29 %/query alignment coverage: 84.4 %/subject alignment coverage: 77.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.846
XF_0877
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_1846
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
   0.604
XF_0880
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.488
XF_2367
GumD protein; Similar to GI|2120726 (percent identity: 73 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.467
XF_0876
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.444
XF_0881
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 75.
       0.435
XF_1183
Polysaccharide biosynthetic protein; Similar to SP|Q04972 (percent identity: 52 %/query alignment coverage: 94.7 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.407
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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