STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0905Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (64 aa)    
Predicted Functional Partners:
miaB
Conserved hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.768
XF_0907
Soluble lytic murein transglycosylase precursor; Similar to GI|2633511 (percent identity: 42 %/query alignment coverage: 51.9 %/subject alignment coverage: 85.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.520
XF_0904
ATP-binding protein; Similar to SP|P77349 (percent identity: 55 %/query alignment coverage: 100.3 %/subject alignment coverage: 91.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.498
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.