STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
XF_0909Ubiquinol cytochrome C oxidoreductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (420 aa)    
Predicted Functional Partners:
XF_0908
Ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.999
XF_0910
Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit; Similar to SP|O31216 (percent identity: 48 %/query alignment coverage: 93.7 %/subject alignment coverage: 97.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 0.999
XF_0317
NADH-ubiquinone oxidoreductase, NQO13 subunit; Similar to SP|P50974 (percent identity: 50 %/query alignment coverage: 101.0 %/subject alignment coverage: 98.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -141.
 
 
 0.988
XF_1389
Cytochrome O ubiquinol oxidase, subunit I; Similar to SP|P18401 (percent identity: 69 %/query alignment coverage: 98.1 %/subject alignment coverage: 99.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.981
XF_1388
Cytochrome O ubiquinol oxidase, subunit III; Similar to SP|P18402 (percent identity: 63 %/query alignment coverage: 98.0 %/subject alignment coverage: 97.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.980
XF_1390
Cytochrome O ubiquinol oxidase, subunit II; Similar to SP|P18400 (percent identity: 56 %/query alignment coverage: 88.7 %/subject alignment coverage: 89.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.977
nuoH
NADH-ubiquinone oxidoreductase, NQO8 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
  
 
 0.971
nuoA
NADH-ubiquinone oxidoreductase, NQO7 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
  
 
 0.940
nuoN
NADH-ubiquinone oxidoreductase, NQO14 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.
  
 
 0.934
XF_0816
Zinc protease; Similar to GI|2661690 (percent identity: 40 %/query alignment coverage: 40.3 %/subject alignment coverage: 88.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 0.928
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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