STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0912Stringent starvation protein B; Similar to SP|P25663 (percent identity: 42 %/query alignment coverage: 114.4 %/subject alignment coverage: 101.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (146 aa)    
Predicted Functional Partners:
XF_0911
Stringent starvation protein A; Similar to SP|P05838 (percent identity: 46 %/query alignment coverage: 98.6 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the GST superfamily.
 
  
 0.989
clpX
ATP-dependent Clp protease ATP binding subunit Clpx; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
    
 
 0.909
ftsQ
Cell division protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
  
     0.764
XF_2240
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 
 0.763
XF_0913
Tropinone reductase; Similar to GI|3980406 (percent identity: 43 %/query alignment coverage: 99.2 %/subject alignment coverage: 80.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.757
ftsB
Conserved hypothetical protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.750
bamE
Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.725
XF_2178
DNA polymerase III, delta subunit; Similar to SP|P28630 (percent identity: 29 %/query alignment coverage: 96.2 %/subject alignment coverage: 96.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.724
XF_1908
Conserved hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.
  
     0.709
lolA
Chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity).
  
     0.683
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.