STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0913Tropinone reductase; Similar to GI|3980406 (percent identity: 43 %/query alignment coverage: 99.2 %/subject alignment coverage: 80.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (261 aa)    
Predicted Functional Partners:
XF_0912
Stringent starvation protein B; Similar to SP|P25663 (percent identity: 42 %/query alignment coverage: 114.4 %/subject alignment coverage: 101.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.757
XF_0911
Stringent starvation protein A; Similar to SP|P05838 (percent identity: 46 %/query alignment coverage: 98.6 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the GST superfamily.
   
   0.685
XF_2269
3-alpha-hydroxysteroid dehydrogenase; Similar to GI|6460829 (percent identity: 34 %/query alignment coverage: 96.5 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.579
XF_0909
Ubiquinol cytochrome C oxidoreductase, cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
   0.566
XF_1640
Ankyrin-like protein; Similar to SP|Q01485 (percent identity: 26 %/query alignment coverage: 81.1 %/subject alignment coverage: 46.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
  0.556
XF_0908
Ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
   0.434
XF_0914
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.433
XF_0910
Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit; Similar to SP|O31216 (percent identity: 48 %/query alignment coverage: 93.7 %/subject alignment coverage: 97.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
   0.429
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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