STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0929Conserved hypothetical protein; Similar to GI|2921423 (percent identity: 26 %/query alignment coverage: 71.5 %/subject alignment coverage: 76.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (583 aa)    
Predicted Functional Partners:
XF_2278
Dolichol-phosphate mannosyltransferase; Similar to GI|2258416 (percent identity: 24 %/query alignment coverage: 92.5 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.860
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.799
rsmB
Conserved hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
    0.791
XF_2277
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.725
XF_0176
Sugar transferase; Similar to GI|3395543 (percent identity: 43 %/query alignment coverage: 79.4 %/subject alignment coverage: 62.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.614
XF_1638
Dolichyl-phosphate mannose synthase related protein; Similar to GI|5457998 (percent identity: 34 %/query alignment coverage: 77.4 %/subject alignment coverage: 100.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.591
XF_0383
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.528
XF_1641
Conserved hypothetical protein; Similar to GI|2804528 (percent identity: 28 %/query alignment coverage: 71.8 %/subject alignment coverage: 101.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.521
def
Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.513
XF_2279
Nucleotide sugar epimerase; Similar to GI|5739472 (percent identity: 51 %/query alignment coverage: 97.7 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.480
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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