STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0932Ferrous iron transport protein; Similar to GI|6458962 (percent identity: 47 %/query alignment coverage: 63.9 %/subject alignment coverage: 69.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (83 aa)    
Predicted Functional Partners:
XF_0933
Ferrous iron transport protein B; Similar to GI|3128348 (percent identity: 52 %/query alignment coverage: 100.3 %/subject alignment coverage: 98.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.997
XF_0934
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.803
XF_0935
Methyltransferase; Similar to GI|1620876 (percent identity: 37 %/query alignment coverage: 83.3 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.581
XF_0936
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.581
XF_1798
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.529
XF_0931
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.475
XF_2675
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.457
nfuA
Conserved hypothetical protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
     
 0.419
XF_1547
Peptidoglycan-associated outer membrane lipoprotein precursor; Similar to GI|79314 (percent identity: 29 %/query alignment coverage: 95.4 %/subject alignment coverage: 94.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.409
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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