STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0935Methyltransferase; Similar to GI|1620876 (percent identity: 37 %/query alignment coverage: 83.3 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (311 aa)    
Predicted Functional Partners:
XF_1804
Site-specific DNA-methyltransferase; Similar to GI|1773269 (percent identity: 39 %/query alignment coverage: 96.6 %/subject alignment coverage: 89.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
  0.915
XF_0936
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.907
XF_0508
Phage-related terminase large subunit; Similar to SP|P36693 (percent identity: 25 %/query alignment coverage: 92.8 %/subject alignment coverage: 101.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.616
XF_0510
Conserved hypothetical protein; Similar to GI|6723246 (percent identity: 25 %/query alignment coverage: 88.5 %/subject alignment coverage: 97.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.581
XF_0932
Ferrous iron transport protein; Similar to GI|6458962 (percent identity: 47 %/query alignment coverage: 63.9 %/subject alignment coverage: 69.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.581
XF_0933
Ferrous iron transport protein B; Similar to GI|3128348 (percent identity: 52 %/query alignment coverage: 100.3 %/subject alignment coverage: 98.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.581
XF_0934
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.581
XF_1859
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.581
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.