STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0964Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (178 aa)    
Predicted Functional Partners:
bamA
Outer membrane antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.888
dapA
Dihydroxydipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
    0.841
bamD
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.802
bamE
Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.706
bamB
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.665
XF_2259
Polyvinylalcohol dehydrogenase; Similar to GI|2120711 (percent identity: 22 %/query alignment coverage: 78.4 %/subject alignment coverage: 64.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.665
XF_0962
Transcriptional regulator; Similar to SP|P23483 (percent identity: 26 %/query alignment coverage: 84.6 %/subject alignment coverage: 92.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.632
XF_0961
Bacterioferritin comigratory protein; Similar to GI|1651777 (percent identity: 51 %/query alignment coverage: 83.6 %/subject alignment coverage: 83.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.557
lptE
Hypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
   
 
 0.536
XF_0343
Outer membrane protein; Similar to GI|4104020 (percent identity: 31 %/query alignment coverage: 98.7 %/subject alignment coverage: 110.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.483
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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