STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_0972Transcriptional regulator (LuxR/UhpA family); Similar to SP|P29369 (percent identity: 38 %/query alignment coverage: 96.7 %/subject alignment coverage: 91.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (210 aa)    
Predicted Functional Partners:
XF_0397
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.978
XF_1330
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.882
XF_2359
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.804
XF_0973
Two-component system, sensor protein; Similar to GI|2808665 (percent identity: 35 %/query alignment coverage: 73.8 %/subject alignment coverage: 91.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 
 0.799
XF_1114
Regulator of pathogenicity factors; Similar to SP|P49246 (percent identity: 59 %/query alignment coverage: 99.7 %/subject alignment coverage: 97.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 252.
 
 
 0.796
XF_2608
Transcriptional regulator (LuxR/UhpA family); Similar to GI|472403 (percent identity: 44 %/query alignment coverage: 94.1 %/subject alignment coverage: 97.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.764
XF_1455
Two-component system, hybrid sensor/regulatory protein; Similar to GI|6458916 (percent identity: 28 %/query alignment coverage: 77.9 %/subject alignment coverage: 101.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.730
XF_0853
Two-component system, sensor protein; Similar to GI|2765035 (percent identity: 37 %/query alignment coverage: 75.8 %/subject alignment coverage: 50.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.563
XF_0971
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.477
XF_2624
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.473
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.