STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0975Polyphosphate-selective porin O; Similar to SP|P32977 (percent identity: 23 %/query alignment coverage: 97.2 %/subject alignment coverage: 86.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (389 aa)    
Predicted Functional Partners:
XF_0214
Conserved hypothetical protein; Similar to GI|987638 (percent identity: 27 %/query alignment coverage: 87.9 %/subject alignment coverage: 103.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.620
XF_0152
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.602
XF_0561
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.567
XF_1324
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.564
XF_1814
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.563
XF_1026
Serine protease; Similar to GI|4115629 (percent identity: 27 %/query alignment coverage: 98.7 %/subject alignment coverage: 86.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.544
XF_1851
Serine protease; Similar to SP|P09489 (percent identity: 25 %/query alignment coverage: 99.0 %/subject alignment coverage: 94.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.534
dctA
C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the inner membrane; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.528
XF_0007
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.516
XF_0267
Serine protease; Similar to GI|4115629 (percent identity: 28 %/query alignment coverage: 99.3 %/subject alignment coverage: 87.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.511
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.