Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
XF_0984Gamma-glutamyltranspeptidase; Similar to SP|P36267 (percent identity: 39 %/query alignment coverage: 95.0 %/subject alignment coverage: 99.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117. (603 aa)    
Predicted Functional Partners:
gshB
Glutathione synthetase; Similar to SP|P04425 (percent identity: 53 %/query alignment coverage: 97.1 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 0.933
pepA
Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
 0.918
XF_0280
Leucine aminopeptidase; Similar to GI|2984306 (percent identity: 34 %/query alignment coverage: 73.6 %/subject alignment coverage: 72.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the peptidase M17 family.
     
 0.918
XF_1210
Glutathione S-transferase; Similar to SP|P44521 (percent identity: 38 %/query alignment coverage: 102.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the GST superfamily.
     
 0.908
XF_1604
ABC transporter vitamin B12 uptake permease; Similar to SP|P06610 (percent identity: 44 %/query alignment coverage: 87.1 %/subject alignment coverage: 92.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glutathione peroxidase family.
     
 0.907
XF_1890
Glutathione peroxidase-like protein; Similar to SP|O32770 (percent identity: 50 %/query alignment coverage: 82.6 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glutathione peroxidase family.
     
 0.907
XF_1428
Glutamate-cysteine ligase precursor; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
     
  0.900
XF_2710
Glutamate synthase, alpha subunit; Similar to SP|P09831 (percent identity: 53 %/query alignment coverage: 99.7 %/subject alignment coverage: 97.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117.
     
 0.891
XF_0983
Ferredoxin; Similar to SP|P44746 (percent identity: 56 %/query alignment coverage: 87.4 %/subject alignment coverage: 88.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.835
XF_1842
Glutamine synthetase; Similar to SP|P06711 (percent identity: 64 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.823
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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