STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_0997Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (94 aa)    
Predicted Functional Partners:
XF_0996
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -48.
       0.773
argF
Ornithine carbamoyltransferase; Catalyzes the transfer of the carbamoyl group from carbamoyl phosphate to the delta-amino group of N(2)-acetyl-L-ornithine to produce N(2)-acetyl-L-citrulline. This is a step in an alternative arginine biosynthesis pathway. The enzyme has no activity with ornithine; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. AOTCase family.
       0.527
cysS
cysteinyl-tRNA synthetase; Similar to SP|P43816 (percent identity: 46 %/query alignment coverage: 98.7 %/subject alignment coverage: 102.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.525
argG
Argininosuccinate synthase; Similar to SP|Q60174 (percent identity: 36 %/query alignment coverage: 97.3 %/subject alignment coverage: 98.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.464
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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