STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
argHArgininosuccinate lyase; Similar to GI|179083 (percent identity: 35 %/query alignment coverage: 89.4 %/subject alignment coverage: 86.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (445 aa)    
Predicted Functional Partners:
argG
Argininosuccinate synthase; Similar to SP|Q60174 (percent identity: 36 %/query alignment coverage: 97.3 %/subject alignment coverage: 98.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.999
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
 
  
 0.997
argF
Ornithine carbamoyltransferase; Catalyzes the transfer of the carbamoyl group from carbamoyl phosphate to the delta-amino group of N(2)-acetyl-L-ornithine to produce N(2)-acetyl-L-citrulline. This is a step in an alternative arginine biosynthesis pathway. The enzyme has no activity with ornithine; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. AOTCase family.
 
  
 0.988
argD
Succinylornithine aminotransferase; Similar to SP|P77581 (percent identity: 48 %/query alignment coverage: 97.3 %/subject alignment coverage: 98.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
  
 0.931
argB
Acetylglutamate kinase; Similar to GI|2984288 (percent identity: 30 %/query alignment coverage: 61.2 %/subject alignment coverage: 98.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.930
XF_1000
Acetylornithine deacetylase; Similar to SP|P23908 (percent identity: 28 %/query alignment coverage: 86.8 %/subject alignment coverage: 82.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.927
XF_1553
Adenylosuccinate lyase; Similar to SP|P44797 (percent identity: 57 %/query alignment coverage: 83.8 %/subject alignment coverage: 97.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.911
XF_1855
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.841
XF_1250
Arginine deaminase; Similar to GI|4512357 (percent identity: 45 %/query alignment coverage: 104.1 %/subject alignment coverage: 100.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the arginase family.
     
 0.833
XF_2596
Isocitrate dehydrogenase; Similar to SP|P33197 (percent identity: 49 %/query alignment coverage: 100.3 %/subject alignment coverage: 67.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.822
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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