STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1069Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (72 aa)    
Predicted Functional Partners:
XF_1070
Succinate dehydrogenase, membrane anchor subunit; Similar to GI|3169722 (percent identity: 38 %/query alignment coverage: 88.7 %/subject alignment coverage: 95.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.710
XF_1071
Succinate dehydrogenase, membrane anchor subunit; Similar to GI|3169723 (percent identity: 36 %/query alignment coverage: 96.1 %/subject alignment coverage: 91.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.710
XF_1072
Succinate dehydrogenase, flavoprotein subunit; Similar to SP|P31038 (percent identity: 69 %/query alignment coverage: 99.7 %/subject alignment coverage: 99.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
       0.710
XF_1073
Succinate dehydrogenase iron-sulfur protein; Similar to SP|Q59662 (percent identity: 70 %/query alignment coverage: 99.2 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.657
XF_1068
Conserved hypothetical protein; Similar to SP|P44000 (percent identity: 26 %/query alignment coverage: 70.8 %/subject alignment coverage: 77.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.529
sdhE
Conserved hypothetical protein; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well.
       0.504
XF_1075
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.439
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.