STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1102Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (97 aa)    
Predicted Functional Partners:
XF_0388
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.928
XF_1271
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the UPF0250 family.
  
     0.732
lptE
Hypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.728
XF_0103
Membrane protein; Similar to GI|1549377 (percent identity: 25 %/query alignment coverage: 84.0 %/subject alignment coverage: 79.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.671
XF_1608
Conserved hypothetical protein; Similar to SP|P51024 (percent identity: 27 %/query alignment coverage: 78.7 %/subject alignment coverage: 92.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.641
XF_1640
Ankyrin-like protein; Similar to SP|Q01485 (percent identity: 26 %/query alignment coverage: 81.1 %/subject alignment coverage: 46.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.628
XF_1525
Conserved hypothetical protein; Similar to SP|P29039 (percent identity: 70 %/query alignment coverage: 91.4 %/subject alignment coverage: 81.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.621
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.608
XF_0152
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.588
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
  
     0.573
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.