STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1124Conserved hypothetical protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. (199 aa)    
Predicted Functional Partners:
XF_1125
Ribonuclease G; Similar to SP|P25537 (percent identity: 53 %/query alignment coverage: 100.0 %/subject alignment coverage: 101.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.895
XF_0148
DNA repair protein; Similar to SP|P25531 (percent identity: 41 %/query alignment coverage: 91.8 %/subject alignment coverage: 95.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the UPF0758 family.
  
  
 0.732
XF_1717
Conserved hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
    0.678
XF_1123
Outer membrane protein; Similar to SP|Q57099 (percent identity: 34 %/query alignment coverage: 88.0 %/subject alignment coverage: 85.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.551
XF_1310
Rod shape-determining protein; Involved in formation and maintenance of cell shape.
  
  
 0.514
XF_1126
Conserved hypothetical protein; Similar to GI|606184 (percent identity: 22 %/query alignment coverage: 40.4 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.474
XF_0453
Integral membrane proteinase; HflC and HflK could regulate a protease.
  
   
 0.424
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.