STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1127TldD protein; Similar to SP|P46473 (percent identity: 61 %/query alignment coverage: 99.6 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (485 aa)    
Predicted Functional Partners:
XF_1131
PmbA protein; Similar to SP|P24231 (percent identity: 45 %/query alignment coverage: 96.7 %/subject alignment coverage: 92.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -66.
 
 
0.939
XF_1128
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.718
XF_1126
Conserved hypothetical protein; Similar to GI|606184 (percent identity: 22 %/query alignment coverage: 40.4 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.594
XF_1129
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.581
XF_1732
NAD(P)H-dependent 2-cyclohexen-1-one reductase; Similar to GI|6552343 (percent identity: 40 %/query alignment coverage: 96.7 %/subject alignment coverage: 102.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.468
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
      
 0.457
XF_1125
Ribonuclease G; Similar to SP|P25537 (percent identity: 53 %/query alignment coverage: 100.0 %/subject alignment coverage: 101.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.411
XF_1124
Conserved hypothetical protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.404
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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