STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1135Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (50 aa)    
Predicted Functional Partners:
XF_1134
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_1133
Tryptophan repressor binding protein; Similar to GI|2650293 (percent identity: 33 %/query alignment coverage: 109.5 %/subject alignment coverage: 108.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.686
XF_1137
NonF-related protein; Similar to GI|5002553 (percent identity: 34 %/query alignment coverage: 92.1 %/subject alignment coverage: 90.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.550
XF_1136
NADP-alcohol dehydrogenase; Similar to GI|6066457 (percent identity: 56 %/query alignment coverage: 97.4 %/subject alignment coverage: 97.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.545
XF_1132
Transcriptional regulator (LysR family); Similar to GI|4928923 (percent identity: 33 %/query alignment coverage: 96.7 %/subject alignment coverage: 95.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the LysR transcriptional regulatory family.
       0.435
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.