STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1209Cardiolipin synthase; Similar to SP|P31071 (percent identity: 34 %/query alignment coverage: 100.0 %/subject alignment coverage: 96.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the phospholipase D family. Cardiolipin synthase subfamily. (467 aa)    
Predicted Functional Partners:
XF_0214
Conserved hypothetical protein; Similar to GI|987638 (percent identity: 27 %/query alignment coverage: 87.9 %/subject alignment coverage: 103.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.900
rpmG
50S ribosomal protein L33; Similar to SP|P44369 (percent identity: 73 %/query alignment coverage: 96.3 %/subject alignment coverage: 92.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the bacterial ribosomal protein bL33 family.
       0.661
XF_1208
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.661
XF_1087
Cardiolipin synthase; Similar to GI|4154695 (percent identity: 33 %/query alignment coverage: 53.7 %/subject alignment coverage: 69.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.656
rpmB
50S ribosomal protein L28; Similar to SP|P44364 (percent identity: 71 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 12; Belongs to the bacterial ribosomal protein bL28 family.
       0.644
XF_1205
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.430
XF_1641
Conserved hypothetical protein; Similar to GI|2804528 (percent identity: 28 %/query alignment coverage: 71.8 %/subject alignment coverage: 101.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.430
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.