STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1222Conserved hypothetical protein; Similar to SP|P36880 (percent identity: 54 %/query alignment coverage: 93.8 %/subject alignment coverage: 94.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (259 aa)    
Predicted Functional Partners:
XF_1223
ABC transporter ATP-binding protein; Similar to SP|P36879 (percent identity: 54 %/query alignment coverage: 97.4 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.973
XF_2007
Conserved hypothetical protein; Similar to SP|P24250 (percent identity: 35 %/query alignment coverage: 87.4 %/subject alignment coverage: 91.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.711
XF_1602
ABC transporter ATP-binding protein; Similar to GI|4155748 (percent identity: 31 %/query alignment coverage: 78.4 %/subject alignment coverage: 97.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 24.
  
  
 0.592
XF_1844
Ammonium transporter; Similar to SP|P37905 (percent identity: 57 %/query alignment coverage: 83.5 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -51.
      
 0.509
XF_1067
Sugar ABC transporter ATP-binding protein; Similar to GI|6459951 (percent identity: 53 %/query alignment coverage: 99.7 %/subject alignment coverage: 79.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 75; Belongs to the ABC transporter superfamily.
     
 0.422
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.413
XF_2567
ABC transporter permease protein; Similar to SP|Q56902 (percent identity: 35 %/query alignment coverage: 97.4 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -21.
    
  0.411
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.