STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_12671,4-beta-cellobiosidase; Similar to SP|P50401 (percent identity: 46 %/query alignment coverage: 83.9 %/subject alignment coverage: 65.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glycosyl hydrolase family 6. (683 aa)    
Predicted Functional Partners:
XF_2708
Endo-1,4-beta-glucanase; Similar to SP|P17974 (percent identity: 47 %/query alignment coverage: 88.8 %/subject alignment coverage: 74.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 0.951
XF_0818
Endo-1,4-beta-glucanase; Similar to SP|P19487 (percent identity: 64 %/query alignment coverage: 62.5 %/subject alignment coverage: 75.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
0.926
XF_0845
Family 3 glycoside hydrolase; Similar to GI|5690010 (percent identity: 45 %/query alignment coverage: 46.6 %/subject alignment coverage: 59.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.924
XF_0439
Beta-glucosidase; Similar to SP|P33363 (percent identity: 41 %/query alignment coverage: 100.3 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.923
XF_0810
Extracellular endoglucanase precursor; Similar to SP|P19487 (percent identity: 33 %/query alignment coverage: 67.4 %/subject alignment coverage: 77.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.781
XF_0846
Beta-mannosidase precursor; Similar to GI|4982197 (percent identity: 35 %/query alignment coverage: 78.0 %/subject alignment coverage: 88.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 117.
 
  
 0.577
XF_0531
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.445
XF_1434
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.417
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.