STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1280Conserved hypothetical protein; Similar to SP|P74409 (percent identity: 43 %/query alignment coverage: 95.4 %/subject alignment coverage: 96.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (453 aa)    
Predicted Functional Partners:
XF_0175
Hemolysin III protein; Similar to SP|P54176 (percent identity: 48 %/query alignment coverage: 94.9 %/subject alignment coverage: 92.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.508
XF_0277
Conserved hypothetical protein; Similar to SP|P30149 (percent identity: 33 %/query alignment coverage: 24.5 %/subject alignment coverage: 73.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.448
guaA
Glutamine amidotransferase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.436
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.417
XF_0388
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
    0.410
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.