STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1302ABC transporter ATP-binding protein; Similar to GI|2314642 (percent identity: 42 %/query alignment coverage: 78.7 %/subject alignment coverage: 86.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (286 aa)    
Predicted Functional Partners:
XF_1303
Conserved hypothetical protein; Similar to GI|2314643 (percent identity: 34 %/query alignment coverage: 69.4 %/subject alignment coverage: 72.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.999
XF_1301
Conserved hypothetical protein; Similar to GI|2983901 (percent identity: 23 %/query alignment coverage: 99.0 %/subject alignment coverage: 101.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.996
XF_0420
Toluene tolerance protein; Similar to GI|4336799 (percent identity: 42 %/query alignment coverage: 98.4 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.984
XF_0419
Toluene tolerance protein; Similar to GI|4336800 (percent identity: 41 %/query alignment coverage: 83.1 %/subject alignment coverage: 91.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.981
XF_0417
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.963
XF_1300
Conserved hypothetical protein; Similar to SP|P29285 (percent identity: 24 %/query alignment coverage: 73.2 %/subject alignment coverage: 86.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.955
XF_0421
Toluene tolerance protein; Similar to GI|4336798 (percent identity: 50 %/query alignment coverage: 93.6 %/subject alignment coverage: 91.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 
0.913
XF_0418
Toluene tolerance protein; Similar to GI|4336801 (percent identity: 24 %/query alignment coverage: 84.9 %/subject alignment coverage: 86.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.864
XF_1304
Conserved hypothetical protein; Similar to GI|2960161 (percent identity: 24 %/query alignment coverage: 94.3 %/subject alignment coverage: 74.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.581
XF_1223
ABC transporter ATP-binding protein; Similar to SP|P36879 (percent identity: 54 %/query alignment coverage: 97.4 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
0.451
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.