STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1463Transcriptional regulator (LacI family); Similar to GI|3449266 (percent identity: 32 %/query alignment coverage: 95.7 %/subject alignment coverage: 88.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (327 aa)    
Predicted Functional Partners:
XF_2710
Glutamate synthase, alpha subunit; Similar to SP|P09831 (percent identity: 53 %/query alignment coverage: 99.7 %/subject alignment coverage: 97.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117.
    
 
 0.955
ptsH
Phosphotransferase system HPr enzyme; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein HPr by enzyme I. Phospho-HPr then transfers it to the PTS EIIA domain.
   
 
 0.883
XF_1465
N-acetylglucosamine-6-phosphate deacetylase; Similar to SP|P15300 (percent identity: 39 %/query alignment coverage: 96.6 %/subject alignment coverage: 97.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.777
XF_1464
Glucosamine--fructose-6-phosphate aminotransferase; Similar to GI|6460504 (percent identity: 47 %/query alignment coverage: 100.9 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.772
XF_1462
Glucose/galactose transporter; Similar to SP|Q44623 (percent identity: 31 %/query alignment coverage: 96.3 %/subject alignment coverage: 88.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.751
ribB
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.663
guaA
Glutamine amidotransferase; Catalyzes the synthesis of GMP from XMP.
    
   0.663
XF_2713
Conserved hypothetical protein; Similar to GI|3661500 (percent identity: 26 %/query alignment coverage: 29.7 %/subject alignment coverage: 38.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.638
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.629
pheT
phenylalanyl-tRNA sinthetase beta chain; Similar to SP|P07395 (percent identity: 42 %/query alignment coverage: 100.4 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.629
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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