STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1479Peptidase; Similar to SP|P24555 (percent identity: 44 %/query alignment coverage: 90.4 %/subject alignment coverage: 100.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (763 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
     0.813
XF_1482
Conserved hypothetical protein; Similar to GI|1929096 (percent identity: 30 %/query alignment coverage: 93.8 %/subject alignment coverage: 88.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.789
XF_1480
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
xerC
Site-specific recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (By similarity). Belongs to the 'phage' integrase family. XerC subfamily.
       0.709
XF_2241
Periplasmic protease; Similar to GI|1184684 (percent identity: 47 %/query alignment coverage: 91.2 %/subject alignment coverage: 98.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -48; Belongs to the peptidase S1C family.
   
  
 0.529
XF_0863
Homoserine O-acetyltransferase; Similar to GI|6681415 (percent identity: 30 %/query alignment coverage: 99.1 %/subject alignment coverage: 90.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the AB hydrolase superfamily. MetX family.
      
 0.503
XF_2223
Threonine synthase; Similar to SP|P00934 (percent identity: 38 %/query alignment coverage: 101.4 %/subject alignment coverage: 101.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.503
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
      
 0.438
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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