STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1488Similar to SP|P24527 (percent identity: 36 %/query alignment coverage: 88.7 %/subject alignment coverage: 97.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (671 aa)    
Predicted Functional Partners:
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
      0.840
XF_0015
Dipeptidyl-peptidase; Similar to GI|2120585 (percent identity: 28 %/query alignment coverage: 54.5 %/subject alignment coverage: 60.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.696
XF_2706
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 
 0.688
XF_0820
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 
 0.669
XF_0576
Metallopeptidase; Similar to GI|2909596 (percent identity: 37 %/query alignment coverage: 93.1 %/subject alignment coverage: 98.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.574
XF_0816
Zinc protease; Similar to GI|2661690 (percent identity: 40 %/query alignment coverage: 40.3 %/subject alignment coverage: 88.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 
 0.570
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 
 0.521
XF_1891
Di-tripeptide ABC transporter membrane protein; Similar to SP|P94408 (percent identity: 35 %/query alignment coverage: 96.7 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.468
ubiE
Ubiquinone/menaquinone transferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
       0.443
XF_2260
Alanyl dipeptidyl peptidase; Similar to GI|5305698 (percent identity: 30 %/query alignment coverage: 101.1 %/subject alignment coverage: 98.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.436
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.