STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1530Subunit C of alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (206 aa)    
Predicted Functional Partners:
XF_1531
Subunit F of alkyl hydroperoxide reductase; Similar to SP|O06465 (percent identity: 77 %/query alignment coverage: 93.0 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.994
XF_1448
Thioredoxin reductase; Similar to SP|P09625 (percent identity: 70 %/query alignment coverage: 97.5 %/subject alignment coverage: 97.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -144.
  
 
 0.924
XF_1199
Thioredoxin; Similar to SP|P80579 (percent identity: 34 %/query alignment coverage: 89.8 %/subject alignment coverage: 92.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.805
XF_1834
Disulphide isomerase; Similar to GI|2622877 (percent identity: 30 %/query alignment coverage: 73.4 %/subject alignment coverage: 75.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.805
XF_1990
Thioredoxin; Similar to GI|2634185 (percent identity: 30 %/query alignment coverage: 61.1 %/subject alignment coverage: 75.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.805
dsbE
C-type cytochrome biogenesis protein/thioredoxin; Involved in disulfide bond formation. Catalyzes a late, reductive step in the assembly of periplasmic c-type cytochromes, probably the reduction of disulfide bonds of the apocytochrome c to allow covalent linkage with the heme. Possible subunit of a heme lyase (By similarity); Belongs to the thioredoxin family. DsbE subfamily.
  
 0.805
fur
Transcriptional regulator (Fur family); Similar to GI|5532520 (percent identity: 85 %/query alignment coverage: 82.9 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the Fur family.
  
  
 0.699
XF_1382
Conserved hypothetical protein; Similar to SP|P73321 (percent identity: 47 %/query alignment coverage: 80.1 %/subject alignment coverage: 100.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the Dps family.
  
  
 0.661
XF_1532
Oxidative stress transcriptional regulator; Similar to GI|2098748 (percent identity: 81 %/query alignment coverage: 93.2 %/subject alignment coverage: 96.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the LysR transcriptional regulatory family.
     
 0.654
XF_0821
Transcriptional regulator (Fur family); Similar to SP|P32692 (percent identity: 38 %/query alignment coverage: 83.4 %/subject alignment coverage: 82.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the Fur family.
  
  
 0.584
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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