STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1555Phage-related protein; Similar to SP|P27078 (percent identity: 34 %/query alignment coverage: 49.3 %/subject alignment coverage: 39.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the 'phage' integrase family. (284 aa)    
Predicted Functional Partners:
XF_1556
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.682
XF_1557
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.682
XF_1558
Single-stranded DNA binding protein; Similar to SP|P40947 (percent identity: 36 %/query alignment coverage: 120.3 %/subject alignment coverage: 57.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.642
XF_1560
Conserved hypothetical protein; Similar to SP|P76065 (percent identity: 29 %/query alignment coverage: 51.5 %/subject alignment coverage: 54.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.562
XF_1559
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.477
XF_1571
Conserved hypothetical protein; Similar to SP|P44183 (percent identity: 30 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.426
XF_1676
Conserved hypothetical protein; Similar to SP|P44183 (percent identity: 30 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.426
XF_2511
Phage-related protein; Similar to SP|P14819 (percent identity: 28 %/query alignment coverage: 87.5 %/subject alignment coverage: 94.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.405
XF_2045
Conjugal transfer protein; Similar to GI|1572560 (percent identity: 76 %/query alignment coverage: 74.6 %/subject alignment coverage: 71.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.403
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.