STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1602ABC transporter ATP-binding protein; Similar to GI|4155748 (percent identity: 31 %/query alignment coverage: 78.4 %/subject alignment coverage: 97.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 24. (283 aa)    
Predicted Functional Partners:
XF_1601
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.959
atpC
ATP synthase, epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.592
XF_1222
Conserved hypothetical protein; Similar to SP|P36880 (percent identity: 54 %/query alignment coverage: 93.8 %/subject alignment coverage: 94.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.586
atpD
ATP synthase, beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
   0.575
XF_1600
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.494
XF_1603
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.460
lolD
ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
   
 0.433
XF_2328
ABC transporter sodium permease; Similar to SP|P46904 (percent identity: 27 %/query alignment coverage: 94.7 %/subject alignment coverage: 96.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.425
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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