STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1609Glucose/galactose transporter; Similar to SP|Q44623 (percent identity: 48 %/query alignment coverage: 96.0 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (426 aa)    
Predicted Functional Partners:
XF_1610
Fructokinase; Similar to GI|1052973 (percent identity: 36 %/query alignment coverage: 97.9 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.813
XF_1611
Conserved hypothetical protein; Similar to SP|P32140 (percent identity: 30 %/query alignment coverage: 89.0 %/subject alignment coverage: 86.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.812
XF_0842
Conserved hypothetical protein; Similar to GI|6522844 (percent identity: 32 %/query alignment coverage: 102.2 %/subject alignment coverage: 104.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.487
XF_1463
Transcriptional regulator (LacI family); Similar to GI|3449266 (percent identity: 32 %/query alignment coverage: 95.7 %/subject alignment coverage: 88.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.458
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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