STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1663Phage-related protein; Similar to GI|928839 (percent identity: 47 %/query alignment coverage: 27.8 %/subject alignment coverage: 39.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (381 aa)    
Predicted Functional Partners:
XF_1664
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_1665
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_0521
Conserved hypothetical protein; Similar to GI|6863126 (percent identity: 21 %/query alignment coverage: 90.4 %/subject alignment coverage: 93.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.536
XF_0704
Phage-related protein; Similar to GI|6118038 (percent identity: 32 %/query alignment coverage: 81.4 %/subject alignment coverage: 66.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.526
XF_1645
Phage-related protein; Similar to GI|6118038 (percent identity: 31 %/query alignment coverage: 54.0 %/subject alignment coverage: 66.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.525
XF_0526
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.511
XF_2115
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.511
XF_1662
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.461
XF_0508
Phage-related terminase large subunit; Similar to SP|P36693 (percent identity: 25 %/query alignment coverage: 92.8 %/subject alignment coverage: 101.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.444
XF_0705
Phage-related protein; Similar to GI|4126648 (percent identity: 32 %/query alignment coverage: 57.8 %/subject alignment coverage: 60.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.443
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.